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Mass Spectrometry Basics

Ions are separated by mass-to-charge ratio, giving molecular mass and fragmentation patterns.

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In-depth explanation of Mass Spectrometry Basics

Mass spectrometry measures the mass-to-charge ratio, m/z, of ions formed from a sample, giving the molar mass of a compound and clues about its structure. The sample is first ionized by a method such as electron impact, electrospray ionization or matrix-assisted laser desorption, and the ions are then accelerated and separated in a mass analyser such as a quadrupole, time-of-flight or magnetic sector. A detector records the abundance of each m/z value, and the spectrum is a plot of relative abundance against m/z. The analysis is performed under high vacuum so that ions travel without collisions. High-resolution instruments measure masses precisely enough to determine elemental formulas.

Going deeper: Mass Spectrometry Basics

Key ideas: Read the spectrum as relative abundance against m/z, with the tallest peak as base peak. For singly charged ions, m/z equals mass. Isotope patterns give clues: carbon-13 adds an M+1 peak of about 1.1 percent per carbon atom, so M+1/M x 100/1.1 estimates the carbon count. Electrospray often gives multiply charged ions for proteins, requiring deconvolution. Resolution is m divided by delta m.

Common mistakes and connections: Students read the base peak as the molecular ion, which is only sometimes true. Ionization method matters: electron impact fragments heavily while soft methods preserve the molecule. Forgetting that ions rather than neutral molecules are measured leads to a missing electron mass or adduct such as M+H or M+Na. Related to isotope abundance, fragmentation and GC-MS.

Visualization of Mass Spectrometry Basics

The nitrogen spectrum has its molecular ion at m/z 28 and a small N+ fragment at 14; high resolution would separate N2 (28.0061) from CO (27.9949). The interactive lesson shows this as a live animation or chart.

Worked example and use case

The exact masses of carbon monoxide (27.9949) and nitrogen (28.0061) differ enough to be distinguished at high resolution.

Frequently asked questions about Mass Spectrometry Basics

What is Mass Spectrometry Basics?

Ions are separated by mass-to-charge ratio, giving molecular mass and fragmentation patterns.

Is Mass Spectrometry Basics a beginner, intermediate or advanced topic?

Mass Spectrometry Basics is a advanced topic in Analytical, Lab & Spectroscopy. It builds on beginner and intermediate topics, so review those first if needed.

What should I learn before Mass Spectrometry Basics?

Study these earlier topics in Analytical, Lab & Spectroscopy first: Gas Chromatography, HPLC, Retention Time.

What comes after Mass Spectrometry Basics?

The next topics in Analytical, Lab & Spectroscopy are Molecular Ion Peak and Fragmentation Patterns.

Can I practise Mass Spectrometry Basics with quizzes?

Yes. The interactive lesson includes a self-check question on Mass Spectrometry Basics, and the Analytical, Lab & Spectroscopy quiz draws on every topic in this area.

Where Mass Spectrometry Basics fits in Analytical, Lab & Spectroscopy

Mass Spectrometry Basics is topic 34 of 99 in Analytical, Lab & Spectroscopy.

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